deepblue_flank {DeepBlueR} | R Documentation |
Create a set of genomic regions that flank the query regions. The original regions are removed from the query. Use the merge command to combine flanking regions with the original query.
deepblue_flank(query_id = NULL, start = NULL, length = NULL, use_strand = NULL, user_key = deepblue_options("user_key"))
query_id |
- A string (Query ID) |
start |
- A int (Number of base pairs after the end of the region. Use a negative number to denote the number of base pairs before the start of the region.) |
length |
- A int (The new region length) |
use_strand |
- A boolean (Use the region column STRAND to define the region direction) |
user_key |
- A string (users token key) |
id - A string (id of the new query)
Other Operating on the data regions: deepblue_aggregate
,
deepblue_binning
,
deepblue_count_regions
,
deepblue_coverage
,
deepblue_distinct_column_values
,
deepblue_extend
,
deepblue_filter_regions
,
deepblue_get_experiments_by_query
,
deepblue_get_regions
,
deepblue_input_regions
,
deepblue_intersection
,
deepblue_merge_queries
,
deepblue_overlap
,
deepblue_query_cache
,
deepblue_query_experiment_type
,
deepblue_score_matrix
,
deepblue_select_annotations
,
deepblue_select_experiments
,
deepblue_select_regions
,
deepblue_tiling_regions
annotation_id = deepblue_select_annotations( annotation_name="CpG Islands", genome="hg19", chromosome="chr1") deepblue_flank(query_id = annotation_id, start = 0, length = 2000, use_strand = TRUE)