deepblue_select_genes {DeepBlueR} | R Documentation |
Select genes (by their name or ID) as genomic regions from the specified gene model.
deepblue_select_genes(genes = NULL, go_terms = NULL, gene_model = NULL, chromosome = NULL, start = NULL, end = NULL, user_key = deepblue_options("user_key"))
genes |
- A string or a vector of string (Name(s) or ENSEMBL ID (ENSGXXXXXXXXXXX.X ) of the gene(s).) |
go_terms |
- A string or a vector of string (gene ontology terms - ID or label) |
gene_model |
- A string (the gene model) |
chromosome |
- A string or a vector of string (chromosome name(s)) |
start |
- A int (minimum start region) |
end |
- A int (maximum end region) |
user_key |
- A string (users token key) |
id - A string (query id)
Other Gene models and genes identifiers: deepblue_count_gene_ontology_terms
,
deepblue_list_gene_models
,
deepblue_list_genes
genes_names = c('CCR1', 'CD164', 'CD1D', 'CD2', 'CD34', 'CD3G', 'CD44') deepblue_select_genes( genes = genes_names, gene_model = "gencode v23")