analytesFromFeatures {DIAlignR} | R Documentation |
Provides all found analytes or only common analytes that have m-score less than analyteFDR.
analytesFromFeatures(features, analyteFDR = 1, commonAnalytes = TRUE)
features |
(list of data-frames) contains features and their properties identified in each run. |
analyteFDR |
(numeric) only analytes that have m-score less than this, will be included in the output. |
commonAnalytes |
(logical) TRUE: intersect across all runs, FASLE: union across all runs. |
a vector of integer.
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2020) + GPL-3 Date: 2020-04-14
dataPath <- system.file("extdata", package = "DIAlignR") fileInfo <- getRunNames(dataPath = dataPath) features <- getFeatures(fileInfo, maxFdrQuery = 1.00, runType = "DIA_Proteomics") ## Not run: commonAnalytes <- analytesFromFeatures(features, analyteFDR = 0.01, commonAnalytes = TRUE) ## End(Not run)