alignToRoot4 {DIAlignR}R Documentation

Step 4 for progressive alignment

Description

This is needed when leaves of the tree are directly aligned to the root

Usage

alignToRoot4(
  dataPath,
  params,
  outFile = "DIAlignR",
  oswMerged = TRUE,
  applyFun = lapply
)

Arguments

dataPath

(string) path to xics and osw directory.

params

(list) parameters are entered as list. Output of the paramsDIAlignR function.

outFile

(string) name of the output file.

oswMerged

(logical) TRUE for experiment-wide FDR and FALSE for run-specific FDR by pyprophet.

applyFun

(function) value must be either lapply or BiocParallel::bplapply.

Author(s)

Shubham Gupta, shubh.gupta@mail.utoronto.ca

ORCID: 0000-0003-3500-8152

License: (c) Author (2021) + GPL-3 Date: 2021-09-25

See Also

progAlignRuns


[Package DIAlignR version 2.1.4 Index]