counts {DEXSeq} | R Documentation |
The counts slot holds the count data as a matrix of non-negative integer count values, one row for each observational unit (gene or the like), and one column for each sample.
## S4 method for signature 'DEXSeqResults' counts(object,normalized=FALSE)
object |
a |
normalized |
logical indicating whether or not to divide the counts by the size factors or normalization factors before returning (normalization factors always preempt size factors) |
an integer matrix
data(pasillaDEXSeqDataSet, package="pasilla") head( counts( dxd ))