plot_numbers {DEP} | R Documentation |
plot_numbers
generates a barplot
of the number of identified proteins per sample.
plot_numbers(se, plot = TRUE)
se |
SummarizedExperiment,
Data object for which to plot protein numbers
(output from |
plot |
Logical(1),
If |
Barplot of the number of identified proteins per sample
(generated by ggplot
)
# Load example data <- UbiLength data <- data[data$Reverse != "+" & data$Potential.contaminant != "+",] data_unique <- make_unique(data, "Gene.names", "Protein.IDs", delim = ";") # Make SummarizedExperiment columns <- grep("LFQ.", colnames(data_unique)) exp_design <- UbiLength_ExpDesign se <- make_se(data_unique, columns, exp_design) # Filter and plot numbers filt <- filter_missval(se, thr = 0) plot_numbers(filt)