NonCodingRNA {DECIPHER}R Documentation

NonCoding Models for Common Non-Coding RNA Families

Description

Pre-trained with NonCoding models for common RNA families found in genomes from organisms belonging to each domain of life.

Usage

data("NonCodingRNA_Archaea")

Details

A set of NonCoding models contained in a named list. Models were built from up to 1000 representative sequences per non-coding RNA family.

Source

Models were built from sequences belonging to families in tRNADB-CE (http://trna.ie.niigata-u.ac.jp/cgi-bin/trnadb/index.cgi) or Rfam (http://rfam.xfam.org).

Examples

data(NonCodingRNA_Archaea)
data(NonCodingRNA_Bacteria)
data(NonCodingRNA_Eukarya)
names(NonCodingRNA_Bacteria)
head(NonCodingRNA_Bacteria)

[Package DECIPHER version 2.21.0 Index]