gatingset_to_flowjo {CytoML} | R Documentation |
It is a R wrapper for the docker app (https://hub.docker.com/r/rglab/gs-to-flowjo)
gatingset_to_flowjo(gs, outFile, showHidden = FALSE, docker_img = NULL, ...)
gs |
a GatingSet object or a folder contains the GatingSet archive (generated by previous |
outFile |
the workspace file path to write |
showHidden |
whether to export hidden gates. Default is FALSE |
docker_img |
the docker image that does the actual work |
... |
other arguments passed to |
Docker images for gatingset_to_flowjo
will be maintained at https://gallery.ecr.aws/x4k5d9i7/cytoverse/gs-to-wsp
docker pull public.ecr.aws/x4k5d9i7/cytoverse/gs-to-wsp:latest
nothing
## Not run: library(flowWorkspace) path <- system.file("extdata",package="flowWorkspaceData") gs_path <- list.files(path, pattern = "gs_manual",full = TRUE) gs <- load_gs(gs_path) #output to flowJo outFile <- tempfile(fileext = ".wsp") gatingset_to_flowjo(gs, outFile) #or directly use the archive as the input (to avoid the extra copying inside of the wrapper) gatingset_to_flowjo(gs_path, outFile) ## End(Not run)