function_run_diffcyt_full_pipeline {CyTOFpower} | R Documentation |
Run diffcyt pipeline
function_run_diffcyt_full_pipeline( onevariation, model = c("limma", "LMM"), effect = c("random", "fixed") )
onevariation |
list, of simulated data (output of the function_wrapper_apply_simulation_nbtimes function). |
model |
character, model to run: "limma" or "LMM". |
effect |
character, effect: "random" or "fixed". |
Function to run diffcyt pipeline. We do not used the diffcyt function directly because of the limma model run differently with the effects.
list with 2 slots: - model_fit: the model fit; - result_summary: results of the model for each marker.