function_create_mock_dataset_withmarkerinfo {CyTOFpower}R Documentation

Compute simulated cell values for one simulation with markers NB information.

Description

Compute simulated cell values for one simulation with markers NB information.

Usage

function_create_mock_dataset_withmarkerinfo(variation)

Arguments

variation

list, list of data.frames containing the different variable input paramaters to generate the data: - marker_name: name of the marker (character); - nb_donor: number of donors; - rho: fold change; - subject_effect: standard deviation for the normal distribution from which the donor's means will be drawn; - mu0: mean of the negative binomial for the gamma distribution from which the means of the different donor will be drawn; - dispersion: dispersion of the negative binomial from which the DE marker's cell values will be drawn; - nb_cell_per_sample: number of cells per sample.

Details

Function to compute the simulated cell values using a combination of variable parameters, when we have prior information about the markers distribution parameters (mean and dispersion of the negative binomial).

Value

list with 4 slots: - df_info: data.frame of experimental information; - DEmarkers_names: vector of DE marker names; - raw_data: data.frame of raw cell values; - data: data.frame of transformed cell values.


[Package CyTOFpower version 0.99.4 Index]