addClipped {CrispRVariants}R Documentation

Extrapolates mapping location from clipped, aligned reads

Description

Extrapolates the mapping location of a read by assuming that the clipped regions should map adjacent to the mapped locations. This is not always a good assumption, particularly in the case of chimeric reads!

Usage

addClipped(bam, ...)

## S4 method for signature 'GAlignments'
addClipped(bam, ...)

Arguments

bam

A GAlignments object

...

additional arguments

Value

A GRanges representation of the extended mapping locations

Author(s)

Helen Lindsay


[Package CrispRVariants version 1.21.0 Index]