addCodonFrame {CrispRVariants}R Documentation

Internal CrispRVariants function for indicating codon frame on an alignment tile plot

Description

Adds vertical dotted lines in intervals of three nucleotides. Codon frame is supplied, alignments are assumed not to span an intron-exon junction.

Usage

addCodonFrame(p, width, codon.frame)

Arguments

p

A ggplot object, typically from CrispRVariants:::makeAlignmentTilePlot

width

The number of nucleotides in the alignments

codon.frame

The leftmost starting location of the next codon - 1,2,or 3

Value

A ggplot object with added vertical lines indicating the frame

Author(s)

Helen Lindsay


[Package CrispRVariants version 1.21.0 Index]