plotIC {Cormotif} | R Documentation |
This function plots BIC and AIC values for all fitted motif models.
plotIC(fitted_cormotif)
fitted_cormotif |
The object obtained from cormotiffit. |
The left graph is the BIC plot and the right graph is the AIC plot.
Hongkai Ji, Yingying Wei
Ji, H., Wei, Y.,(2011) Correlation Motif. Unpublished
data(simudata2) n<-nrow(simudata2) m<-ncol(simudata2) #the expression data is from the second column to \eqn{m} exprs.simu2<-as.matrix(simudata2[,2:m]) #prepare the group ID number for each sample array data(simu2_groupid) #prepare the design matrix for each group of samples data(simu2_compgroup) #fit 2 correlation motif to the data motif.fitted<-cormotiffit(exprs.simu2, simu2_groupid,simu2_compgroup,K=2) plotIC(motif.fitted)