warning_filter_correlated_cell_scExp {ChromSCape} | R Documentation |
warning_filter_correlated_cell_scExp
warning_filter_correlated_cell_scExp( scExp, random_iter, corr_threshold, percent_correlation, run_tsne, downsample, verbose )
scExp |
A SingleCellExperiment object containing 'Cor', a correlation matrix, in reducedDims. |
random_iter |
Number of random matrices to create to calculate random correlation scores. (50) |
corr_threshold |
Quantile of random correlation score above which a cell is considered to be 'correlated' with another cell. (99) |
percent_correlation |
Percentage of the cells that any cell must be 'correlated' to in order to not be filtered. (1) |
run_tsne |
Re-run tsne ? (FALSE) |
downsample |
Number of cells to calculate correlation filtering threshold ? (2500) |
verbose |
(TRUE) |
Warnings or Errors if the input are not correct