concatenate_scBed_into_clusters {ChromSCape}R Documentation

Concatenate single-cell BED into clusters

Description

Concatenate single-cell BED into clusters

Usage

concatenate_scBed_into_clusters(affectation, files_list, odir)

Arguments

affectation

Annotation data.frame containing cluster information

files_list

Named list of scBED file paths to concatenate. List Names must match affectation$sample_id and basenames must match affectation$barcode.

odir

Output directory to write concatenate pseudo-bulk BEDs.

Value

Merge single-cell BED files into cluster BED files. Ungzip file if BED is gzipped.


[Package ChromSCape version 1.3.22 Index]