num_cell_after_QC_filt_scExp {ChromSCape} | R Documentation |
Table of cells before / after QC
num_cell_after_QC_filt_scExp(scExp, annot, datamatrix)
scExp |
A SingleCellExperiment object. |
annot |
A raw annotation data.frame of cells before filtering. |
datamatrix |
A matrix of cells per regions before filtering. |
A formatted kable in HTML.
raw <- create_scDataset_raw() scExp = create_scExp(raw$mat, raw$annot) scExp_filtered = filter_scExp(scExp) ## Not run: num_cell_after_QC_filt_scExp( scExp_filtered,SingleCellExperiment::colData(scExp)) ## End(Not run)