getBindCor {ChIPseqR}R Documentation

Calculate cross-correlation between read counts

Description

This function calculates the cross-correlation between read counts on forward and reverse strand.

Usage

getBindCor(data, max.lag, summary, plot = TRUE, ...)

Arguments

data

An object of class ReadCounts

max.lag

Maximum lag to use in cross-correlation calculation.

summary

Function to use to summarise cross-correlation across chromosomes.

plot

Logical indicating whether to plot cross-correlation.

...

Further arguments, currently ignored.

Details

Function fttcor in package “timsac” is used to carry out the computation.

Value

The (summarised) cross-correlation. If summary is missing a list of cross-correlations for each chromosome is returned.

Author(s)

Peter Humburg

See Also

fftcor, ReadCounts, getBindLen


[Package ChIPseqR version 1.47.0 Index]