getTagMatrix.internal {ChIPseeker}R Documentation

getTagMatrix.internal

Description

calculate the tag matrix

Usage

getTagMatrix.internal(
  peak,
  weightCol = NULL,
  windows,
  flip_minor_strand = TRUE
)

Arguments

peak

peak file or GRanges object

weightCol

column name of weight, default is NULL

windows

a collection of region with equal size, eg. promoter region.

flip_minor_strand

whether flip the orientation of minor strand

Value

tagMatrix

Author(s)

G Yu


[Package ChIPseeker version 1.30.0 Index]