getTagMatrix.binning.internal {ChIPseeker} | R Documentation |
calculate the tagMatrix by binning the idea was derived from the function of deeptools https://deeptools.readthedocs.io/en/develop/content/tools/computeMatrix.html
getTagMatrix.binning.internal( peak, weightCol = NULL, windows, nbin = 800, upstream = NULL, downstream = NULL )
peak |
peak peak file or GRanges object |
weightCol |
weightCol column name of weight, default is NULL |
windows |
windows a collection of region with equal or not equal size, eg. promoter region, gene region. |
nbin |
the amount of nbines needed to be splited and it should not be more than min_body_length |
upstream |
rel object, NULL or actual number |
downstream |
rel object, NULL or actual number |
tagMatrix