fit.freq {CSSP} | R Documentation |
Compute the estimated frequency for ChIP counts based on the CSSP model.
fit.freq(fit, chip) ## S4 method for signature 'CSSPFit' fit.freq(fit, chip)
fit |
A CSSPFit-class object for the fitted CSSP model. |
chip |
A numeric vector of ChIP sample bin counts. |
A data.frame object containing
count The counts of each bin.\ freq The ChIP data frequency at this count value.\ freq.est The estimated frequency using the posterior distributions of the bin-level poisson intensities. |
Chandler Zuo zuo@stat.wisc.edu
data( sampleFit ) data( bin.data ) fit.freq( sampleFit, chip = bin.data@tagCount )