plotImages {CONFESS} | R Documentation |
It generates the plotted results.
plotImages(number, origImg, chaImgs, binChaImgs, stats, pix, log.transform, minDiff, sample, image.type)
number |
Integer. An index number that regulates the fluorescence estimation procedure. |
origImg |
Data matrix. The original BF image to be read and processed. |
chaImgs |
List. A list of the channel images (data matrices) of a sample. |
binChaImgs |
List. A list of binary segmented channel image data. |
stats |
List. A series of foreground and background statistics. |
pix |
List. A list of bright spot coordinates in the channels. |
log.transform |
Logical. If TRUE the image data are plotted in the log scale. |
minDiff |
Float. the mu_hat of the H0: image-to-noise ratio = log(foreground_signal) - log(background_signal) = mu_hat. Rejection of H0 implies that the identified spot is brighter than background. Default is 0.5. |
sample |
Character string. The sample ID. |
image.type |
Character string. A triplet of IDs to characterize the type of images under study. They refer to the ImageType part of the original image or txt file names. |
the plotted results and statistics of the signal-to-noise ratio