cnmops_to_CNVresults {CNVgears} | R Documentation |
CNVgears
formatConvert cn.mops results into CNVgears
format
cnmops_to_CNVresults(cnRes, sample_list, markers)
cnRes |
cn.mops results (after integer CN calling) |
sample_list |
minimal cohort metadata, a |
markers |
a |
the input object cnRes
converted into CNVresults
library(cn.mops) data(cn.mops) resCNMOPS <- cn.mops(XRanges) resCNMOPS <- calcIntegerCopyNumbers(resCNMOPS) resCNMOPS_cnvs <- cnvs(resCNMOPS) # cnmops_calls <- cnmops_to_CNVresults(resCNMOPS_cnvs, sample_list, markers)