graph_non_transitive_subset_topology {CIMICE} | R Documentation |
By default, CIMICE computes the relation between genotypes using the subset relation. For the following steps it is also important that the transitive edges are removed.
graph_non_transitive_subset_topology(samples, labels)
samples |
mutational matrix |
labels |
genotype labels |
a graph with the wanted topology
require(dplyr) preproc <- example_dataset() %>% dataset_preprocessing samples <- preproc[["samples"]] freqs <- preproc[["freqs"]] labels <- preproc[["labels"]] genes <- preproc[["genes"]] graph_non_transitive_subset_topology(samples, labels)