expr_data {CEMiTool} | R Documentation |
Retrieve and set expression attribute
expr_data(cem, ...) ## S4 method for signature 'CEMiTool' expr_data(cem, filter = TRUE, apply_vst = FALSE, filter_pval = 0.1, ...) expr_data(cem) <- value ## S4 replacement method for signature 'CEMiTool' expr_data(cem) <- value
cem |
Object of class |
... |
Additional parameters to |
filter |
logical. If TRUE, retrieves filtered expression data (Default: TRUE) |
apply_vst |
logical. If TRUE, applies variance stabilizing transformation to expression data (Default: FALSE) |
filter_pval |
logical. Threshold for filter p-value. Ignored if filter = FALSE (Default: 0.1) |
value |
Object of class |
Object of class data.frame
with gene expression data
# Initialize an empty CEMiTool object cem <- new_cem() # Get example expression data data(expr0) # Add expression file to CEMiTool object expr_data(cem) <- expr0 # Check expression file head(expr_data(cem))