plot_ora {CEMiTool} | R Documentation |
Creates a bar plot with the results of module overrepresentation analysis
plot_ora(cem, ...) ## S4 method for signature 'CEMiTool' plot_ora(cem, n = 10, pv_cut = 0.05, ...)
cem |
Object of class |
... |
parameters to plot_ora_single |
n |
number of modules to show |
pv_cut |
p-value significance cutoff. Default is 0.05. |
Object of class CEMiTool
with ORA plots
# Get example CEMiTool object data(cem) # Read example gmt file gmt <- read_gmt(system.file('extdata', 'pathways.gmt', package='CEMiTool')) # Run overrepresentation analysis cem <- mod_ora(cem, gmt) # Plot module gene expression profiles cem <- plot_ora(cem) # Check resulting plot show_plot(cem, "ora")