isInputValidCarnival {CARNIVAL} | R Documentation |
Checks validity of all inputs of CARNIVAL
isInputValidCarnival( perturbations = NULL, measurements, priorKnowledgeNetwork, weights = NULL, carnivalOptions = defaultLpSolveCarnivalOptions() )
perturbations |
(optional, if inverse CARNIVAL flavour is used further) vector of targets of perturbations. |
measurements |
vector of the measurements (i.e. DoRothEA/VIPER normalised enrichment scores) |
priorKnowledgeNetwork |
data frame of the prior knowledge network |
weights |
(optional) vector of the additional weights: e.g. PROGENy pathway scores or measured protein activities. |
carnivalOptions |
the list of options for the run. See defaultLpSolveCarnivalOptions(), defaultCplexCarnivalOptions, defaultCbcCarnivalOptions. |
TRUE if everything passed the checks.