ranges2genes {CAGEr} | R Documentation |
Assign gene symbol(s) to Genomic Ranges.
ranges2genes(ranges, genes)
ranges |
Genomics Ranges object, for example extracted from a
RangedSummarizedExperiment object with the |
genes |
A |
This private (non-exported) function is used to assign gene symbols
to genomic ranges. It is run by annotateCTSS
, which has to
be run before CTSStoGenes
.
A Rle
character vector of same length as the GRanges object,
indicating one gene symbol or a semicolon-separated list of gene symbols for each
range.
Charles Plessy
CTSScoordinatesGR
, exampleZv9_annot
Other CAGEr annotation functions:
annotateCTSS()
,
plotAnnot()
,
ranges2annot()
,
ranges2names()
Other CAGEr gene expression analysis functions:
CTSStoGenes()
,
GeneExpDESeq2()
CAGEr:::ranges2genes(CTSScoordinatesGR(exampleCAGEexp), exampleZv9_annot)