librarySizes {CAGEr} | R Documentation |
Extracts the library sizes (total number of CAGE tags) for all CAGE datasets
from CAGEexp
objects.
librarySizes(object) ## S4 method for signature 'CAGEexp' librarySizes(object)
object |
A CAGEexp object. |
Library sizes are calculated when loading data with the getCTSS
function and stored in the librarySizes
column of the colData
of
CAGEexp
objects.
Returns an integer vector of total number of CAGE tags (library size) for all CAGE datasets in the CAGEr object.
Vanja Haberle
Other CAGEr accessor methods:
CTSSclusteringMethod()
,
CTSScoordinatesGR()
,
CTSScumulativesTagClusters()
,
CTSSnormalizedTpmDF()
,
CTSStagCountDF()
,
GeneExpDESeq2()
,
GeneExpSE()
,
consensusClustersGR()
,
expressionClasses()
,
genomeName()
,
inputFilesType()
,
inputFiles()
,
sampleLabels()
,
seqNameTotalsSE()
,
tagClustersGR()
librarySizes(exampleCAGEexp)