import.bam {CAGEr} | R Documentation |
Imports CTSS data from a BAM file.
import.bam( filepath, filetype, sequencingQualityThreshold = 10, mappingQualityThreshold = 20 )
filepath |
The path to the BAM file. |
filetype |
bam or bamPairedEnd. |
sequencingQualityThreshold |
See getCTSS(). |
mappingQualityThreshold |
See getCTSS(). |
Other loadFileIntoGPos:
bam2CTSS()
,
import.CTSS()
,
import.bam.ctss()
,
import.bedCTSS()
,
import.bedScore()
,
import.bedmolecule()
,
loadFileIntoGPos()
,
moleculesGR2CTSS()
# TODO: add exmaple file # import.bam(system.file("extdata", "example.bam", package = "CAGEr"))