ranges2names {CAGEr}R Documentation

ranges2names

Description

Intersection of genomic ranges

Usage

ranges2names(rangesA, rangesB)

Arguments

rangesA

A GRanges object.

rangesB

A second GRanges object.

Details

This private (non-exported) function intersects two genomic ranges and for each element of the first object returns the name of the elements of the second object that it intersects with.

Value

A Rle character vector of same length as the rangesA GRanges object, indicating one name or a semicolon-separated list of names from the each rangesB object.

Author(s)

Charles Plessy

See Also

Other CAGEr annotation functions: annotateCTSS(), plotAnnot(), ranges2annot(), ranges2genes()

Examples

names(exampleZv9_annot) <- exampleZv9_annot$gene_name
CAGEr:::ranges2names(CTSScoordinatesGR(exampleCAGEexp), exampleZv9_annot)


[Package CAGEr version 2.0.1 Index]