import.bam.ctss {CAGEr} | R Documentation |
Imports CTSS data from a BAM file.
import.bam.ctss( filepath, filetype, sequencingQualityThreshold, mappingQualityThreshold, removeFirstG, correctSystematicG, genome )
filepath |
The path to the BAM file. |
filetype |
bam or bamPairedEnd. |
sequencingQualityThreshold |
See getCTSS(). |
mappingQualityThreshold |
See getCTSS(). |
removeFirstG |
See getCTSS(). |
correctSystematicG |
See getCTSS(). |
genome |
See coerceInBSgenome(). |
Returns a CTSS object.
Other loadFileIntoGPos:
bam2CTSS()
,
import.CTSS()
,
import.bam()
,
import.bedCTSS()
,
import.bedScore()
,
import.bedmolecule()
,
loadFileIntoGPos()
,
moleculesGR2CTSS()