bam2CTSS {CAGEr}R Documentation

bam2CTSS

Description

Converts from BAM to CTSS

Usage

bam2CTSS(gr, removeFirstG, correctSystematicG, genome)

Arguments

gr

A GRanges object returned by import.bam.

removeFirstG

See getCTSS().

correctSystematicG

See getCTSS().

genome

See coerceInBSgenome().

Details

Converts genomic ranges representing SAM/BAM alignments into a CTSS object.

Value

Returns a CTSS object.

See Also

Other loadFileIntoGPos: import.CTSS(), import.bam.ctss(), import.bam(), import.bedCTSS(), import.bedScore(), import.bedmolecule(), loadFileIntoGPos(), moleculesGR2CTSS()


[Package CAGEr version 1.99.0 Index]