seqNameTotalsSE {CAGEr} | R Documentation |
Get or set a SummarizedExperiment
summarising whole-chromosome
expression levels in the experiment slot seqNameTotals
and the sample metadata
of the CAGEexp
object.
seqNameTotalsSE(object) ## S4 method for signature 'CAGEexp' seqNameTotalsSE(object) seqNameTotalsSE(object) <- value
object |
A |
value |
A SummarizedExperiment object where rows represent reference sequences such as chromosomes. |
Charles Plessy
summariseChrExpr
Other CAGEr accessor methods:
CTSSclusteringMethod()
,
CTSScoordinatesGR()
,
CTSScumulativesTagClusters()
,
CTSSnormalizedTpmDF()
,
CTSStagCountDF()
,
GeneExpDESeq2()
,
GeneExpSE()
,
consensusClustersGR()
,
expressionClasses()
,
genomeName()
,
inputFilesType()
,
inputFiles()
,
librarySizes()
,
sampleLabels()
,
tagClustersGR()
seqNameTotalsSE(exampleCAGEexp)