quickEnhancers {CAGEfightR}R Documentation

Identify and quantify enhancers.

Description

A convienient wrapper around clusterBidirectionally, subsetByBidirectionality and quantifyClusters.

Usage

quickEnhancers(object)

Arguments

object

RangedSummarizedExperiment: Location and counts of CTSSs, usually found by calling quantifyCTSSs.

Value

RangedSummarizedExperiment containing location and counts of enhancers.

See Also

Other Wrapper functions: quickGenes(), quickTSSs()

Examples

# See the CAGEfightR vignette for an overview!

[Package CAGEfightR version 1.13.1 Index]