drawBubbles {BubbleTree} | R Documentation |
draw the Bubbles
drawBubbles(.Object, rbd, col = NULL) ## S4 method for signature 'BTreePlotter' drawBubbles(.Object, rbd, col = "gray80")
.Object |
the object |
rbd |
the rbd object |
col |
the col value |
draw the bubbles on the track
load(system.file("data", "allCall.lst.RData", package="BubbleTree")) btreeplotter <- new("BTreePlotter", max.ploidy=5, max.size=10) nn <- "sam2" rbd1 <- allCall.lst[[nn]]@rbd rbd2 <- allCall.lst[[nn]]@rbd.adj arrows <- trackBTree(btreeplotter, rbd1, rbd2, min.srcSize=0.01, min.trtSize=0.01) btree <- drawBTree(btreeplotter, rbd1) + drawBubbles(btreeplotter, rbd2, "gray80") + arrows