getCorum {BioPlex} | R Documentation |
Functionality for retrieving the CORUM protein complex data. Available complex collections include:
complete set of complexes,
core set of complexes,
complexes with splice variants.
See references.
getCorum( set = c("all", "core", "splice"), organism = "Human", remap.uniprot.ids = FALSE, cache = TRUE )
set |
character. Valid options include:
Defaults to |
organism |
character. Use |
remap.uniprot.ids |
logical. Should the protein-to-gene mappings from CORUM
(i.e. UNIPROT-to-SYMBOL and UNIPROT-to-ENTREZID) be updated using Bioc annotation
functionality? Currently only supported in combination with |
cache |
logical. Should a locally cached version used if available?
Defaults to |
A data.frame
.
CORUM: http://mips.helmholtz-muenchen.de/corum/#download
# Obtain the core set of CORUM complexes core <- getCorum(set = "core")