filterByCov {BiSeq} | R Documentation |
BSraw
object with a minimum
coverage
This method reduces a BSraw
object to its regions (or single CpGs) with a minimum number of reads.
filterByCov(object, minCov, global)
object |
A |
minCov |
Minimum number of reads overlapping the CpG sites. |
global |
A logical indicating whether the regions should achieve
the minimum coverage in each sample. If |
A BSraw
object containing the CpGs or regions achieving
the minimum coverage in all (if global=TRUE
) or at least one
(if global=FALSE
) samples.
Katja Hebestreit
data(rrbs) rrbs.reduced <- filterByCov(object=rrbs, minCov=10, global=TRUE)