overdispersions {BUSseq} | R Documentation |
BUSseq_MCMC
Function
The function gives the estimated overdispersion parameters in the output
SingleCellExperiment
object.
overdispersions(sce_BUSseqfit)
sce_BUSseqfit |
An output |
phi.est |
The estimated overdispersion parameters, a G by B matrix, where [g,b] element is the overdispersion parameter of gene g in batch b. |
Fangda Song
Song, Fangda, Ga Ming Angus Chan, and Yingying Wei. Flexible experimental designs for valid single-cell RNA-sequencing experiments allowing batch effects correction. Nature communications 11, no. 1 (2020): 1-15.
# "BUSseqfits_example" is an example output BUSseqfits_example phi.est <- overdispersions(BUSseqfits_example)