raw_read_counts {BUSseq} | R Documentation |
BUSseq_MCMC
Function
The function gives the original read count matrix.
This function is actually equivalent to
assay(sce_BUSseqfit, "counts")
.
raw_read_counts(sce_BUSseqfit)
sce_BUSseqfit |
An output |
CountData_raw |
The raw read counts, a matrix with each row for a gene and each column for a cell. |
Fangda Song
Song, Fangda, Ga Ming Angus Chan, and Yingying Wei. Flexible experimental designs for valid single-cell RNA-sequencing experiments allowing batch effects correction. Nature communications 11, no. 1 (2020): 1-15.
# "BUSseqfits_example" is an example output library(SingleCellExperiment) BUSseqfits_example Example_CountData_raw <- raw_read_counts(BUSseqfits_example)