overdispersions {BUSseq}R Documentation

Obtain the Overdispersion Parameters from the Output of the BUSseq_MCMC Function

Description

The function gives the estimated overdispersion parameters in the output SingleCellExperiment object.

Usage

overdispersions(sce_BUSseqfit)

Arguments

sce_BUSseqfit

An output SingleCellExperiment object obtained from the function BUSseq_MCMC.

Value

phi.est

The estimated overdispersion parameters, a G by B matrix, where [g,b] element is the overdispersion parameter of gene g in batch b.

Author(s)

Fangda Song

References

Song, Fangda, Ga Ming Angus Chan, and Yingying Wei. Flexible experimental designs for valid single-cell RNA-sequencing experiments allowing batch effects correction. Nature communications 11, no. 1 (2020): 1-15.

Examples

# "BUSseqfits_example" is an example output
BUSseqfits_example
phi.est <- overdispersions(BUSseqfits_example)

[Package BUSseq version 0.99.18 Index]