baseline_expression_values {BUSseq}R Documentation

Obtain the Log-Scale Baseline Expression Levels from the Output of the BUSseq_MCMC Function

Description

The function gives the estimated log-scale baseline expression levels from the output SingleCellExperiment object.

Usage

baseline_expression_values(sce_BUSseqfit)

Arguments

sce_BUSseqfit

An output SingleCellExperiment object by the function BUSseq_MCMC.

Value

alpha.est

The estimated log-scale baseline expression levels, a G-dimensional vector whose g-th element is the estimated log-scale mean gene expression level of gene g in the first cell type.

Author(s)

Fangda Song

References

Song, Fangda, Ga Ming Angus Chan, and Yingying Wei. Flexible experimental designs for valid single-cell RNA-sequencing experiments allowing batch effects correction. Nature communications 11, no. 1 (2020): 1-15.

Examples

# "BUSseqfits_example" is an example output
BUSseqfits_example
alpha.est <- baseline_expression_values(BUSseqfits_example)

[Package BUSseq version 0.99.18 Index]