location_batch_effects {BUSseq} | R Documentation |
BUSseq_MCMC
Function
The function gives the estimated location batch effects in the output
SingleCellExperiment
object.
location_batch_effects(sce_BUSseqfit)
sce_BUSseqfit |
An output |
nu.est |
The estimated location batch effects, a G by B matrix, where [g,b] element is the location batch effect on gene g in the batch b compared with the first batch. Note that the first column is zero as the first batch is taken as the reference batch without batch effects. |
Fangda Song
Song, Fangda, Ga Ming Angus Chan, and Yingying Wei. Flexible experimental designs for valid single-cell RNA-sequencing experiments allowing batch effects correction. Nature communications 11, no. 1 (2020): 1-15.
# "BUSseqfits_example" is an example output BUSseqfits_example nu.est <- location_batch_effects(BUSseqfits_example)