subset_annot {BUSpaRse} | R Documentation |
Exclude chromosomes present in the annotation but absent from the genome and add information about circular chromosomes.
subset_annot(Genome, annot) ## S4 method for signature 'DNAStringSet' subset_annot(Genome, annot) ## S4 method for signature 'BSgenome' subset_annot(Genome, annot)
Genome |
Either a |
annot |
Either a |
A subsetted genome annotation of the same type of the input genome annotation.
library(BSgenome.Hsapiens.UCSC.hg38) library(EnsDb.Hsapiens.v86) library(GenomeInfoDb) gn <- BSgenome.Hsapiens.UCSC.hg38 seqlevelsStyle(gn) <- "Ensembl" subset_annot(gn, EnsDb.Hsapiens.v86)