mergeReplicates {BRGenomics} | R Documentation |
This simple convenience function uses
mergeGRangesData
to combine
replicates (e.g. biological replicates) of basepair-resolution GRanges
objects.
mergeReplicates( ..., field = "score", sample_names = NULL, makeBRG = TRUE, exact_overlaps = FALSE, ncores = getOption("mc.cores", 2L) )
... |
Either a list of GRanges objects, or any number of GRanges objects
(see |
field |
The metadata field that contains count information for each
range. |
sample_names |
Optional character vector with which to rename the datasets. This is useful if the sample names do not conform to the "_rep" naming scheme. |
makeBRG, exact_overlaps |
See |
ncores |
The number of cores to use. This function will try to maximize
the use of the |
A list of GRanges objects.
data("PROseq") ps_list <- list(a_rep1 = PROseq[seq(1, length(PROseq), 4)], b_rep1 = PROseq[seq(2, length(PROseq), 4)], a_rep2 = PROseq[seq(3, length(PROseq), 4)], b_rep2 = PROseq[seq(4, length(PROseq), 4)]) mergeReplicates(ps_list, ncores = 1)