save_files_to_rDolphin {AlpsNMR} | R Documentation |
The function saves the CSV files required by to_rDolphin and Automatic_targeted_profiling functions for metabolite profiling.
save_files_to_rDolphin(files_rDolphin, output_directory)
files_rDolphin |
a list containing 4 elements from
|
output_directory |
a directory in which the CSV files are saved |
CSV files containing:
Other import/export functions:
Pipelines
,
files_to_rDolphin()
,
load_and_save_functions
,
nmr_data()
,
nmr_meta_export()
,
nmr_read_bruker_fid()
,
nmr_read_samples()
,
nmr_zip_bruker_samples()
,
save_profiling_output()
,
to_ChemoSpec()
Other nmr_dataset_1D functions:
[.nmr_dataset_1D()
,
computes_peak_width_ppm()
,
file_lister()
,
files_to_rDolphin()
,
format.nmr_dataset_1D()
,
is.nmr_dataset_1D()
,
load_and_save_functions
,
new_nmr_dataset_1D()
,
nmr_align_find_ref()
,
nmr_baseline_removal()
,
nmr_baseline_threshold()
,
nmr_exclude_region()
,
nmr_integrate_regions()
,
nmr_interpolate_1D()
,
nmr_meta_add()
,
nmr_meta_export()
,
nmr_meta_get_column()
,
nmr_meta_get()
,
nmr_normalize()
,
nmr_pca_build_model()
,
nmr_pca_outliers_filter()
,
nmr_pca_outliers_plot()
,
nmr_pca_outliers_robust()
,
nmr_pca_outliers()
,
nmr_ppm_resolution()
,
plot.nmr_dataset_1D()
,
plot_webgl()
,
print.nmr_dataset_1D()
,
rdCV_PLS_RF_ML()
,
rdCV_PLS_RF()
,
to_ChemoSpec()
,
validate_nmr_dataset_peak_table()
,
validate_nmr_dataset()
Other to_rDolphin_blood functions:
save_profiling_output()
## Not run: dataset <- system.file("dataset-demo", package = "AlpsNMR") excel_file <- system.file("dataset-demo", "dummy_metadata.xlsx", package = "AlpsNMR") nmr_dataset <- nmr_read_samples_dir(dataset) files_rDolphin = files_to_rDolphin_blood(nmr_dataset) output_directory = "." save_files_to_rDolphin(files_rDolphin, output_directory) ## End(Not run)