AMARETTO_Preprocess {AMARETTO}R Documentation

AMARETTO_Preprocess

Description

Wrapper code that analyzes process TCGA GISTIC (CNV) and gene expression (rna-seq or microarray) data via one call

Usage

AMARETTO_Preprocess(DataSetDirectories = DataSetDirectories,
  BatchData = BatchData)

Arguments

DataSetDirectories

DataSetDirectories

BatchData

BatchData

Value

result

Examples

## Not run: 
TargetDirectory <-  "Downloads"  # path to data download directory
CancerSite <- 'CHOL'
DataSetDirectories <- AMARETTO_Download(CancerSite,TargetDirectory)
ProcessedData <- AMARETTO_Preprocess(DataSetDirectories,BatchData)

## End(Not run)

[Package AMARETTO version 1.9.0 Index]