plotDifftoBase {ABSSeq} | R Documentation |
Plot absolute differencs against expression levels
plotDifftoBase(object, foldname = "foldChange", adj.pcut = 0.05, cols = c("black", "red"), pch = 16, xlab = "log2 of Expression level", ylab = "log2 fold-change", ...)
object |
a ABSDataSet |
foldname |
indicates kind of fold-change in plotting, default is 'foldChange', see |
adj.pcut |
cutoff for differential expressed genes, marked by different color, default is 0.05 |
cols |
the colors to mark the non-DE and DE genes, defualt is black and red, respectively |
pch |
pch, default is 16 |
xlab |
xlab, default is 'log2 of Expression level' |
ylab |
ylab, default is 'log2 fold-change' |
..., |
further arguments to |
Plot absolute differencs against expression levels and mark the gene with a color at a given cutoff of fold-change
data(simuN5) obj <- ABSDataSet(counts=simuN5$counts, groups=factor(simuN5$groups)) obj <- ABSSeq(obj) plotDifftoBase(obj)