Identify genes associated with multiple expression phenotypes in single-cell CRISPR screening data


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Documentation for package ‘scMAGeCK’ version 1.6.0

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scMAGeCK-package Identify genes associated with multiple expression phenotypes in single-cell CRISPR screening data
featurePlot Detect the sgRNA distribution and generate Vlnplot to identity gene regulation between different cells.
pre_processRDS Integrate the imformation of sgRNA into RDS file for the further analysis.
scmageck Identify genes associated with multiple expression phenotypes in single-cell CRISPR screening data
scmageck_lr Use linear regression to test the association of gene knockout with all possible genes
scmageck_rra Use RRA to test the association of gene knockout with certain marker expression
selectPlot generate the selection plot