An R interface to the Ontology Lookup Service

Documentation for package ‘rols’ version 2.22.1

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A C D I L M O P R S T U misc

-- A --

all.equal-method	Class '"Ontology"'
all.equal-method	Class '"Term"'
allRows	Class '"OlsSearch"'
ancestors	Class '"Term"'
as.character.CVParam	Class '"CVParam"'
as.CVParam.character	Class '"CVParam"'
as.Term.data.frame	Class '"Term"'
as.Terms.data.frame	Class '"Term"'

-- C --

charIsCVParam	Class '"CVParam"'
children	Class '"Term"'
class:OlsSearch	Class '"OlsSearch"'
class:Ontologies	Class '"Ontology"'
class:Ontology	Class '"Ontology"'
class:Properties	Class '"Properties"'
class:Property	Class '"Properties"'
class:Term	Class '"Term"'
class:Terms	Class '"Term"'
coerce-method	Class '"CVParam"'
coerce-method	Class '"OlsSearch"'
coerce-method	Class '"Ontology"'
coerce-method	Class '"Term"'
CVParam	Class '"CVParam"'
CVParam-class	Class '"CVParam"'

-- D --

derivesFrom	Class '"Term"'
descendants	Class '"Term"'

-- I --

isObsolete	Class '"Term"'
isObsolete-method	Class '"Term"'
isRoot	Class '"Term"'
isRoot-method	Class '"Term"'

-- L --

lapply-method	Class '"Ontology"'
lapply-method	Class '"Term"'
length-method	Class '"Ontology"'
length-method	Class '"Properties"'
length-method	Class '"Term"'

-- M --

makeOntologies	Makes an Ontologies instance based on the response from api/ontologies @return
makeOntology	Makes an Ontology instance based on the response from /api/ontologies/ontology_id
makeProperty	Makes a Property instance based on the response from /api/ontologies/ontology/terms/iri
makeTerm	Makes a Term instance based on the response from /api/ontologies/ontology/terms/iri

-- O --

olsDesc	Class '"Ontology"'
olsDesc-method	Class '"Ontology"'
olsLoaded	Class '"Ontology"'
olsLoaded-method	Class '"Ontology"'
olsNamespace	Class '"Ontology"'
olsNamespace-method	Class '"Ontology"'
olsPrefix	Class '"Ontology"'
olsPrefix-method	Class '"Ontology"'
olsRoot	Class '"Ontology"'
olsRoot-method	Class '"Ontology"'
olsRows	Class '"OlsSearch"'
olsRows<-	Class '"OlsSearch"'
OlsSearch	Class '"OlsSearch"'
olsSearch	Class '"OlsSearch"'
OlsSearch-class	Class '"OlsSearch"'
olsStatus	Class '"Ontology"'
olsStatus-method	Class '"Ontology"'
olsTitle	Class '"Ontology"'
olsTitle-method	Class '"Ontology"'
olsUpdated	Class '"Ontology"'
olsUpdated-method	Class '"Ontology"'
olsVersion	Class '"Ontology"'
olsVersion-method	Class '"Ontology"'
Ontologies	Class '"Ontology"'
Ontologies-class	Class '"Ontology"'
Ontologies-method	Class '"Ontology"'
Ontology	Class '"Ontology"'
Ontology-class	Class '"Ontology"'
Ontology-method	Class '"Ontology"'

-- P --

parents	Class '"Term"'
partOf	Class '"Term"'
Properties	Class '"Properties"'
properties	Class '"Properties"'
Properties-class	Class '"Properties"'
properties-method	Class '"Properties"'
Property	Class '"Properties"'
Property-class	Class '"Properties"'

-- R --

Class '"CVParam"'

-- S --

show-method	Class '"CVParam"'
show-method	Class '"OlsSearch"'
show-method	Class '"Ontology"'
show-method	Class '"Properties"'
show-method	Class '"Term"'

-- T --

Term	Class '"Term"'
term	Class '"Term"'
Term-class	Class '"Term"'
term-method	Class '"Term"'
termDesc	Class '"Term"'
termDesc-method	Class '"Term"'
termId	Class '"Term"'
termId-method	Class '"Term"'
termLabel	Class '"Term"'
termLabel-method	Class '"Term"'
termNamespace	Class '"Term"'
termNamespace-method	Class '"Term"'
termOntology	Class '"Term"'
termOntology-method	Class '"Term"'
termPrefix	Class '"Term"'
termPrefix-method	Class '"Term"'
Terms	Class '"Term"'
terms	Class '"Term"'
Terms-class	Class '"Term"'
terms-method	Class '"Term"'
termSynonym	Class '"Term"'
termSynonym-method	Class '"Term"'

-- U --

Class '"Term"'

-- misc --

.properties	Constructs the query for all properties from a given ontology
.term	Constructs the query for a single term from a given ontology
.terms	Constructs the query for all term from a given ontology
[-method	Class '"Ontology"'
[-method	Class '"Term"'
[[-method	Class '"Ontology"'
[[-method	Class '"Term"'