genphen: tool for quantification of genotype-phenotype
associations in genome wide association studies (GWAS)
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Documentation for package ‘genphen’ version 1.22.0
Help Pages
| dichotomous.phenotype.saap | Dichotomous phenotype dataset |
| genotype.saap | SAAP genotype dataset |
| genotype.saap.msa | SAAP genotype dataset (msa) |
| genotype.snp | SNP genotype dataset |
| genotype.snp.msa | SNP genotype dataset (msa) |
| phenotype.saap | Continuous phenotype dataset |
| phenotype.snp | Continuous phenotype dataset |
| runDiagnostics | Data reduction procedure |
| runGenphen | Genetic association analysis using Bayesian inference and statistical learning methods |
| runPhyloBiasCheck | Check for phylogenetic bias |