calculateHZEIperNT | Generates table with HZEI scores per nucleotide of a sequence. |
calculateMaxEntScanScore | Calculate MaxEntScan score of a splice site sequence |
gene2transcript | Small data frame specifying a transcript to certain genes for synonymous use. |
generateHEXplorerPlot | Generates plot with HZEI values and splice site strengths from a list holding information about an SNV. |
getMaxEntInfo | Generates table with MaxEntScan scores per potential SA position. |
getSeqInfoFromVariation | Collects information about genomic context of sequence variants. |
hbg | Donor sequences and their HBS |
hex | Hexamers and Z scores |
prepareReferenceFasta | Imports Fasta file from filepath. |
referenceDnaStringSet | Small DNAStringset as exemplary reference genome sequence |
startVarConApp | Start GUI of VarCon. |
transCoord | Small table as exemplary transcript table with exon coordinates |