Gene Expression Meta-analysis Visualization Tool


[Up] [Top]

Documentation for package ‘MetaVolcanoR’ version 1.8.0

Help Pages

calc_vi A function to calculate variance from confidence interval limits
collapse_deg A function to filter out geneIDs standing for the same gene name
combining_mv A function to draw the 'Combining meta-analysis' MetaVolcano
cum_freq_data A data formating function for inverse-cummulative DEG distribution
deg_def A DEG definition function
diffexplist Differential expression results from five studies
draw_cum_freq A function to visualize the inverse-cummulative DEG distribution
draw_degbar A function for DEG barplot visualization
draw_forest A function to draw a forest plot from the REM MetaVolcano result
MetaVolcano-class An S4 class to represent MetaVolcanoR results
plot_mv A MetaVolcano ploting function
plot_rem A function to plot the Random Effect Model (REM) MetaVolcano
remodel A function to model foldchange variance along several studies This function calculate the REM-summary fold-change
rem_mv A function to perform the Random Effect Model (REM) MetaVolcano
rename_col A column renaming function merged inputs
set_degbar_data A function setting data format for DEG barplot visualization
votecount_mv A function to draw the 'Vote-counting meta-analysis' MetaVolcano