HMMcopy-package | Bias-free copy number estimation and robust CNA detection in tumour samples from WGS HTS data |
correctReadcount | Readcount correction for GC and mappability bias |
HMMcopy | Bias-free copy number estimation and robust CNA detection in tumour samples from WGS HTS data |
HMMcopy-dataset | HMMcopy example dataset |
HMMsegment | Segmentation and classification of copy number profiles |
normal_copy | HMMcopy example dataset |
plotBias | Visualization functions for correctReadcount results |
plotCorrection | Visualization functions for correctReadcount results |
plotParam | Visualization functions for correctReadcount results |
plotSegments | Visualization functions for correctReadcount results |
rangedDataToSeg | WIG Output Functions |
rangedDataToWig | WIG Output Functions |
stateCols | Visualization functions for correctReadcount results |
tumour | HMMcopy example dataset |
tumour_copy | HMMcopy example dataset |
tumour_param | HMMcopy example dataset |
tumour_reads | HMMcopy example dataset |
tumour_segments | HMMcopy example dataset |
wigsToRangedData | Parsing and sorting of uncorrected read and sequence information files |
wigToArray | WIG Import Functions |
wigToRangedData | WIG Import Functions |