Integration of CellNOptR to add missing links


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Documentation for package ‘CNORfeeder’ version 1.34.0

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CNORfeeder-package R package to integrate literature-constrained and data-driven methods to infer signalling networks from perturbation experiments
Binference Bayesian network inference
buildFeederObjectDynamic Building Feeder-Object for the integration to the PKN
cnolist CNOlist
CNORfeeder R package to integrate literature-constrained and data-driven methods to infer signalling networks from perturbation experiments
database OmniPath PPI
feederObject Feeder Object
gaBinaryT1W Genetic algorithm used to optimise a model differently weighting links
identifyMisfitIndices Identifying indices of poorly fitted measurements
indices Mis-fit indices
integratedModel Integrated Model
integrateLinks Integrating the new links to the PKN
linksRanking Ranking of links inferred from data
makeBTables Make Boolean tables
mapBTables2model Integrate Boolean tables with the model
mapDDN2model Integrate data-drive network with the model
MIinference Mutual information based network inference
model Prior Knowledge Network
PPINigraph Protein-protein interaction netwrok
runDynamicFeeder Modelling the integrated PKN with CNORode
simData CNORode simuation data
UniprotIDdream Uniprot identifiers for proteins in DreamModel
weighting Weight integrated links.