Make read coverage plots from BigWig files

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Documentation for package ‘wiggleplotr’ version 1.17.0

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wiggleplotr-package wiggleplotr
getGenotypePalette Returns a three-colour palette suitable for visualising read coverage stratified by genotype
makeManhattanPlot Make a Manahattan plot of p-values
ncoa7_cdss Coding sequences from 9 protein coding transcripts of NCOA7
ncoa7_exons Exons from 9 protein coding transcripts of NCOA7
ncoa7_metadata Gene metadata for NCOA7
pasteFactors Paste two factors together and preserved their joint order.
plotCoverage Plot read coverage across genomic regions
plotCoverageFromEnsembldb Plot read coverage directly from ensembldb object.
plotCoverageFromUCSC Plot read coverage directly from UCSC OrgDb and TxDb objects.
plotTranscripts Quickly plot transcript structure without read coverage tracks
plotTranscriptsFromEnsembldb Plot transcripts directly from ensembldb object.
plotTranscriptsFromUCSC Plot transcripts directly from UCSC OrgDb and TxDb objects.
wiggleplotr wiggleplotr