Top Confident Effect Sizes


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Documentation for package ‘topconfects’ version 1.9.0

Help Pages

confects_plot Top confident effect sizes plot
confects_plot_me Mean-expression vs effect size plot
deseq2_confects Confident log2 fold changes based on a DESeq2 analysis
edger_confects Confident log2 fold change based on the edgeR Quasi-Likelihood method
limma_confects Confident log2 fold changes based on a limma fit object
nest_confects General purpose function to find confident effect sizes, controlling FDR
normal_confects Confident effect sizes from from normal or t distributions
rank_rank_plot A plot to compare two rankings