Brings SingleCellExperiment to the Tidyverse


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Documentation for package ‘tidySingleCellExperiment’ version 1.3.2

Help Pages

add_count Count observations by group
add_count.default Count observations by group
add_count.SingleCellExperiment Count observations by group
as_tibble Coerce lists, matrices, and more to data frames
bind Efficiently bind multiple data frames by row and column
cell_type_df Cell types of 80 PBMC single cells
count Count observations by group
extract unnest
ggplot Create a new ggplot from a tidySingleCellExperiment object
glimpse Coerce lists, matrices, and more to data frames
join_features Add differential featureion information to a tbl using edgeR.
join_transcripts (DEPRECATED) Extract and join information for transcripts.
nest unnest
pbmc_small pbmc_small
pbmc_small_nested_interactions Intercellular ligand-receptor interactions for 38 ligands from a single cell RNA-seq cluster.
pivot_longer Pivot data from wide to long
plot_ly Initiate a plotly visualization
print Printing tibbles
print.SingleCellExperiment Printing tibbles
separate Unite multiple columns into one by pasting strings together
tidy tidy for SingleCellExperiment
unite Unite multiple columns into one by pasting strings together
unnest unnest