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| alias_hash | Ribo Class |
| alias_hash-method | Ribo Class |
| experiments | Ribo Class |
| experiments-method | Ribo Class |
| experiment_info | Ribo Class |
| experiment_info-method | Ribo Class |
| format_version | Ribo Class |
| format_version-method | Ribo Class |
| get_coverage | Retrieves the coverage data for a given transcript |
| get_experiments | Provides a list of experiments from a .ribo file |
| get_info | Get information about the .ribo file |
| get_internal_region_coordinates | Retrieves the region stop and start coordinates |
| get_internal_region_lengths | Returns the overall length of each region with UTR Junctions |
| get_length_distribution | Retrieves the length distribution of a given region |
| get_metadata | Retrieves the metadata of an experiment |
| get_metagene | Retrieves the metagene data from a .ribo file |
| get_original_region_coordinates | Retrieves the region stop and start coordinates |
| get_original_region_lengths | Returns the overall length of each region |
| get_reference_names | Retrieves a list of reference names |
| get_region_coordinates | Retrieves the region stop and start coordinates |
| get_region_counts | Retrieves the region counts from a .ribo file |
| get_region_lengths | Returns the overall length of each region with UTR Junctions |
| get_rnaseq | Information on the RNA-Seq data of the experiments, if any |
| get_tidy_metagene | Retrieves the metagene data in a tidy format |
| has_metadata | Ribo Class |
| has_metadata-method | Ribo Class |
| left_span | Ribo Class |
| left_span-method | Ribo Class |
| length_max | Ribo Class |
| length_max-method | Ribo Class |
| length_min | Ribo Class |
| length_min-method | Ribo Class |
| length_offset | Ribo Class |
| length_offset-method | Ribo Class |
| metagene_radius | Ribo Class |
| metagene_radius-method | Ribo Class |
| original_hash | Ribo Class |
| original_hash-method | Ribo Class |
| path | Ribo Class |
| path-method | Ribo Class |
| plot_length_distribution | Plots the length distribution |
| plot_metagene | Plots the metagene coverage data |
| plot_region_counts | Plots the region counts of UTR5, CDS, and UTR3 |
| reference | Ribo Class |
| reference-method | Ribo Class |
| rename_default | Rename function for appris transcriptome naming convention |
| rename_transcripts | Renames the transcripts |
| Ribo | Ribo Class |
| Ribo-class | Ribo Class |
| ribor | ribor: A package for reading .ribo files |
| right_span | Ribo Class |
| right_span-method | Ribo Class |
| set_aliases | Set the aliases of a ribo object |
| show-method | Ribo Class |
| transcript_info | Ribo Class |
| transcript_info-method | Ribo Class |