Access and analyze DNA methylation database compilations

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Documentation for package ‘recountmethylation’ version 1.4.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

ba.background	ba.background
ba.biotinstaining.grn	ba.background
ba.biotinstaining.red	ba.background
ba.bisulfiteconv1.grn	ba.background
ba.bisulfiteconv1.red	ba.background
ba.bisulfiteconv2	ba.background
ba.extension.grn	ba.background
ba.extension.red	ba.background
ba.hybridization.hi.vs.med	ba.background
ba.hybridization.med.vs.low	ba.background
ba.nonpolymorphic.grn	ba.background
ba.nonpolymorphic.red	ba.background
ba.restoration	ba.background
ba.specificity1.grn	ba.background
ba.specificity1.red	ba.background
ba.specificity2	ba.background
ba.targetremoval1	ba.background
ba.targetremoval2	ba.background
bactrl	bactrl
bathresh	Get BeadArray control outcomes from a matrix of metric signals
data_mdpost	Retrieve all available sample metadata from an HDF5 database.
gds_idat2rg	Get IDATs as an RGChannelSet from GEO/GDS
gds_idatquery	Query and download IDATs from GEO Data Sets
getdb	Access database files.
getdb_h5se_gm	Access database files.
getdb_h5se_gr	Access database files.
getdb_h5se_rg	Access database files.
getdb_h5se_test	Access database files.
getdb_h5_rg	Access database files.
getdb_h5_test	Access database files.
getrg	Query and store data from h5 file signal tables
get_crossreactive_cpgs	get_crossreactive_cpgs
get_fh	get_fh
get_qcsignal	get_qcsignal
get_rmdl	Get DNAm assay data.
get_servermatrix	get_servermatrix
hread	Query and store an HDF5 dataset on row and column indices.
make_si	make_si
matchds_1to2	Match two datasets on rows and columns
query_si	query_si
rgse	Form an RGChannelSet from a list containing signal data matrices
servermatrix	servermatrix
setup_sienv	setup_sienv
smfilt	smfilt