Access and analyze DNA methylation database compilations


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Documentation for package ‘recountmethylation’ version 1.4.0

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data_mdpost Retrieve all available sample metadata from an HDF5 database.
gds_idat2rg Get IDATs as an RGChannelSet from GEO/GDS
gds_idatquery Query and download IDATs from GEO Data Sets
getdb Access database files.
getdb_h5se_gm Access database files.
getdb_h5se_gr Access database files.
getdb_h5se_rg Access database files.
getdb_h5se_test Access database files.
getdb_h5_rg Access database files.
getdb_h5_test Access database files.
getrg Query and store data from h5 file signal tables
get_rmdl Get DNAm assay data.
get_servermatrix get_servermatrix
hread Query and store an HDF5 dataset on row and column indices.
matchds_1to2 Match two datasets on rows and columns
rgse Form an RGChannelSet from a list containing signal data matrices
servermatrix servermatrix
smfilt smfilt