Integrative clustering of multi-type genomic data

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Documentation for package ‘iClusterPlus’ version 1.29.0

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breast.chr17 Breast cancer data set DNA copy number and mRNA expression measure on chromosome 17
CNregions A function to remove redundant copy number regions
compute.pod A function to compute the proportion of deviation from perfect block diagonal matrix
coord genomic coordinates
gbm.exp GBM data
gbm.mut GBM data
gbm.seg GBM data
getBIC Utility functions for iClusterPlus package
getClusters Utility functions for iClusterPlus package
getDevR Utility functions for iClusterPlus package
glp good lattice points using the uniform design
iCluster Integrative clustering of multiple genomic data types
iCluster2 Integrative clustering of multiple genomic data types
iClusterBayes Integrative clustering of multiple genomic data types
iClusterPlus Integrative clustering of multiple genomic data types
iManual Utility functions for iClusterPlus package
plotHeatmap A function to generate heatmap panels sorted by integrated cluster assignment.
plotHMBayes A function to generate heatmap panels sorted by integrated cluster assignment.
plotiCluster A function to generate cluster separability matrix plot.
plotRI A function to generate reproducibility index plot.
simuResult The results for the analysis of the simulated data.
tune.iCluster2 Integrative clustering of multiple genomic data types
tune.iClusterBayes Integrative clustering of multiple genomic data
tune.iClusterPlus Integrative clustering of multiple genomic data
variation.hg18.v10.nov.2010 Human genome variants of the NCBI 36 (hg18) assembly