epidecodeR: a functional exploration tool for epigenetic and epitranscriptomic regulation

Documentation for package ‘epidecodeR’ version 1.1.3

epidecodeR	Analysis function for generating epidecodeR object. This function distributes dysregulated genes into user defined groups and calculates cumulative probabilities and ANOVA test statistics for significance testing in difference of log2FC means between groups of dysregulated genes
epidecodeR-class	epidecodeR object - a S4 class object
get_empirical_table	get_empirical_table method
get_empirical_table-method	get_empirical_table method
get_eventcounts	get_eventcounts method
get_eventcounts-method	get_eventcounts method
get_grpcounts	get_grpcounts method
get_grpcounts-method	get_grpcounts method
get_grptables	get_grptables method
get_grptables-method	get_grptables method
get_signtest	get_signtest method
get_signtest-method	get_signtest method
get_theoretical_table	get_theoretical_table method
get_theoretical_table-method	get_theoretical_table method
makeplot	Generate CDF plot using epidecodeR object generated using epidecodeR function
plot_test	Generates boxplot of distribution of log2FC of dysregulated genes and adjusted P value of signficance test of difference in mean log2FC between groups computed using one-way ANOVA test