R Interface to Ensembl Variant Effect Predictor

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Documentation for package ‘ensemblVEP’ version 1.35.0

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advanced VEPParam objects
advanced-method VEPParam objects
advanced<- VEPParam objects
advanced<--method VEPParam objects
advancedOpts VEPParam objects
basic VEPParam objects
basic-method VEPParam objects
basic<- VEPParam objects
basic<--method VEPParam objects
basicOpts VEPParam objects
cache VEPParam objects
cache-method VEPParam objects
cache<- VEPParam objects
cache<--method VEPParam objects
cacheOpts VEPParam objects
class:VEPFlags VEPFlag objects
class:VEPParam VEPParam objects
class:VEPParam67 VEPParam objects
class:VEPParam73 VEPParam objects
class:VEPParam75 VEPParam objects
class:VEPParam77 VEPParam objects
class:VEPParam78 VEPParam objects
class:VEPParam82 VEPParam objects
class:VEPParam88 VEPParam objects
colocatedVariants VEPParam objects
colocatedVariants-method VEPParam objects
colocatedVariants<- VEPParam objects
colocatedVariants<--method VEPParam objects
colocatedVariantsOpts VEPParam objects
currentVEP VEPFlag objects
database VEPParam objects
database-method VEPParam objects
database<- VEPParam objects
database<--method VEPParam objects
databaseOpts VEPParam objects
dataformat VEPParam objects
dataformat-method VEPParam objects
dataformat<- VEPParam objects
dataformat<--method VEPParam objects
dataformatOpts VEPParam objects
ensemblVEP Query Ensembl Variant Effect Predictor
ensemblVEP-method Query Ensembl Variant Effect Predictor
filterqc VEPParam objects
filterqc-method VEPParam objects
filterqc<- VEPParam objects
filterqc<--method VEPParam objects
filterqcOpts VEPParam objects
flagOpts VEPFlag objects
flags VEPFlag objects
flags-method VEPFlag objects
flags<- VEPFlag objects
flags<--method VEPFlag objects
identifier VEPParam objects
identifier-method VEPParam objects
identifier<- VEPParam objects
identifier<--method VEPParam objects
identifierOpts VEPParam objects
input VEPParam objects
input-method VEPParam objects
input<- VEPParam objects
input<--method VEPParam objects
inputOpts VEPParam objects
oldRuntimeOptions VEPParam runtime options
output VEPParam objects
output-method VEPParam objects
output<- VEPParam objects
output<--method VEPParam objects
outputOpts VEPParam objects
parseCSQToGRanges Parse the CSQ column of a VCF object into a GRanges object
parseCSQToGRanges-method Parse the CSQ column of a VCF object into a GRanges object
runtimeOptions VEPParam runtime options
scriptPath VEPParam objects
scriptPath<- VEPParam objects
show-method VEPFlag objects
show-method VEPParam objects
supportedVEP VEPFlag objects
VEPFlags VEPFlag objects
VEPFlags-class VEPFlag objects
VEPParam VEPParam objects
VEPParam-class VEPParam objects
VEPParam67-class VEPParam objects
VEPParam73-class VEPParam objects
VEPParam75-class VEPParam objects
VEPParam77-class VEPParam objects
VEPParam78-class VEPParam objects
VEPParam82-class VEPParam objects
VEPParam88-class VEPParam objects
version VEPParam objects
version<- VEPParam objects