Deconvolution by Convex Analysis of Mixtures


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Documentation for package ‘debCAM’ version 1.11.0

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debCAM-package debCAM: A package for fully unsupervised deconvolution of complex tissues.
AfromMarkers Proportion matrix estimation from marker genes
Amat Deconvoluted matrix accessors
Amat-method Deconvoluted matrix accessors
AS-accessor Deconvoluted matrix accessors
CAM Convex Analysis of Mixtures
CAMASest A and S matrix estimation by CAM
CAMASObj Class "CAMASObj"
CAMASObj-class Class "CAMASObj"
CAMMGCluster MG cluster detection for CAM
CAMMGObj Class "CAMMGObj"
CAMMGObj-class Class "CAMMGObj"
CAMObj Class "CAMObj"
CAMObj-class Class "CAMObj"
CAMPrep Data preprocessing for CAM
CAMPrepObj Class "CAMPrepObj"
CAMPrepObj-class Class "CAMPrepObj"
cornerSort Candidate combinations as corners
debCAM debCAM: A package for fully unsupervised deconvolution of complex tissues.
MDL Minimum Description Length
MDLObj Class "MDLObj"
MDLObj-class Class "MDLObj"
MGsforA Marker genes detected by CAM for estimating A
MGstatistic Statistics for ranking marker genes
PCAmat Dimension-reduction loading matrix accessor
PCAmat-method Dimension-reduction loading matrix accessor
plot-method Minimum Description Length
ratMix3 Gene expression data downsampled from GSE19380
redoASest Re-estimate A, S matrix
reselectMG Reselect markers by thresholding
sffsHull Sequential Forward Floating Selection (SFFS) to approximate convex hull
simplexplot The plot of scatter simplex
Smat Deconvoluted matrix accessors
Smat-method Deconvoluted matrix accessors
XWProj Perspective projection to obtain simplex