addClustering | addClustering |
addClustering-method | addClustering |
calculateClustersSimilarity | calculateClustersSimilarity |
calculateClustersSimilarity-method | calculateClustersSimilarity |
clusterCellsInternal | clusterCellsInternal |
clusterCellsInternal-method | clusterCellsInternal |
conclusCacheClear | conclusCacheClear |
constructors | constructors |
Dbscan | The Dbscan class |
Dbscan-class | The Dbscan class |
DbscanCluster | constructors |
exportResults | exportResults |
exportResults-method | exportResults |
loadDataOrMatrix | loadDataOrMatrix |
normaliseCountMatrix | normaliseCountMatrix |
normaliseCountMatrix-method | normaliseCountMatrix |
plotCellHeatmap | plotCellHeatmap |
plotCellHeatmap-method | plotCellHeatmap |
plotCellSimilarity | plotCellSimilarity |
plotCellSimilarity-method | plotCellSimilarity |
plotClusteredTSNE | plotClusteredTSNE |
plotClusteredTSNE-method | plotClusteredTSNE |
plotClustersSimilarity | plotClustersSimilarity |
plotClustersSimilarity-method | plotClustersSimilarity |
plotGeneExpression | plotGeneExpression |
plotGeneExpression-method | plotGeneExpression |
rankGenes | rankGenes |
rankGenes-method | rankGenes |
retrieveFromGEO | retrieveFromGEO |
retrieveGenesInfo | retrieveGenesInfo |
retrieveGenesInfo-method | retrieveGenesInfo |
retrieveTableClustersCells | retrieveTableClustersCells |
retrieveTableClustersCells-method | retrieveTableClustersCells |
retrieveTopClustersMarkers | retrieveTopClustersMarkers |
retrieveTopClustersMarkers-method | retrieveTopClustersMarkers |
runCONCLUS | runCONCLUS |
runDBSCAN | runDBSCAN |
runDBSCAN-method | runDBSCAN |
testClustering | testClustering |
testClustering-method | testClustering |
Tsne | The Tsne class |
Tsne-class | The Tsne class |
TsneCluster | constructors |