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| cellscape | CellScape |
| cellscapeOutput | Get depth first search of a tree |
| checkAlpha | Get depth first search of a tree |
| checkClonalPrev | Get depth first search of a tree |
| checkCloneColours | Get depth first search of a tree |
| checkGtypePositioning | Get depth first search of a tree |
| checkMinDims | Get depth first search of a tree |
| checkPerts | Get depth first search of a tree |
| checkRequiredInputs | Get depth first search of a tree |
| checkTreeEdges | Get depth first search of a tree |
| dfs_tree | Get depth first search of a tree |
| findMode | Get depth first search of a tree |
| getChromBounds | Get depth first search of a tree |
| getChromBoxInfo | Get depth first search of a tree |
| getCNVHeatmapForEachSC | Get depth first search of a tree |
| getEmptyGrid | Get depth first search of a tree |
| getGenomeLength | Get depth first search of a tree |
| getMutationsData | Get depth first search of a tree |
| getMutOrder | Get depth first search of a tree |
| getNBPPerPixel | Get depth first search of a tree |
| getTargetedHeatmapForEachSC | Get depth first search of a tree |
| processUserData | Get depth first search of a tree |
| renderCnvTree | Get depth first search of a tree |
| replaceSpaces | Get depth first search of a tree |